UF - Sweet Corn Lab

• Oliveira, A.A. (g), RESENDE M.F.R., Ferrão, L.F.V (p), Amadeu, R.R., Guimarães, L.J.M., Guimarães, C.T., Pastina, M.M., Margarido, G.R.A. Genomic prediction applied to multiple traits and environments in second season maize hybrids. Heredity, 2020 (In press)

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• Klee, H., RESENDE M.F.R., Plant Domestication: Reconstructing the Route to Modern Tomatoes. Current Biology, 30:8, 2020

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• Liu, R., Boehlein S.K. (P), Tracy W.F., RESENDE M.F.R., Hudalla G.A. Characterizing the Physical Properties and Cell Compatibility of Phytoglycogen Extracted from Different Sweet Corn Varieties. Molecules 25 (3), 637. 2020

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• Ferrão L.F.V (p), Marinho C. (P), Munoz P., RESENDE M.F.R. Integration of Dominance and Marker x Environment Interactions into Maize Genomic Prediction Models. Crop Science, online version: https://doi.org/10.1002/csc2.20096, 2020.

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• Benevenuto, J., Bhakta, M., Lohr, D.A. RESENDE M.F.R., et al. Cost-effective detection of genome-wide signatures for 2,4-D herbicide resistance adaptation in red clover. Scientific Reports 9, 20037, 2019.

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• Hu, Y. (P), RESENDE M.F.R., Bombarely, A., Brym, M., Bassil, E., Chambers A. - Genomics-based diversity analysis of Vanilla species using a Vanilla planifolia draft genome and Genotyping-By-Sequencing. Scientific Reports, 9:3416. 2019

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• Telfer E, Graham N, Macdonald L, Li Y, Klapstě J, RESENDE M.F.R., et al. A high density exome capture genotype-by-sequencing panel for forestry breeding in Pinus radiata. PLoS ONE 14(9), 2019.

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• De Bem, I.O., RESENDE M.F.R., Ferrão L.F., Amadeu R., Endelman J., Kirst M., Coelho A.S.G., Munoz, P. Genomic prediction of autotetraploids; influence of relationship matrices, allele dosage, and continuous genotyping calls in phenotype prediction. G3: Genes, Genomes, Genetics 9 (4), 1189-1198, 2019

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• Filho J.A. (g), Rodrigues, J.F.G. (g), Silva, F.F., Resende, M.D.V., Munoz, P., Kirst, M., RESENDE M.F.R., Genomic prediction of additive and non-additive effects using genetic markers and pedigrees. G3: Genes, Genomes, Genetics 9(8), 2739-2748, 2019.

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• Acosta J.J., Fahrenkrog A.M., Neves L.G., RESENDE M.F.R, Dervinis C., Holliday J.A., Kirst, M. The genome-wide genetic diversity and evolutionary history of the conifers Pinus taeda and Pinus elliottii. Genome Biology and Evolution, evz016 - 2019.

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• Ferrão L.F.V, Marinho C., Munoz P., RESENDE M.F.R., Integration of Dominance and Marker x Environment Interactions into Maize Genomic Prediction Models. bioRxiv, 2018

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• Moraes B.F.X, Santos R. F., Lima B.M., Aguiar A.M., Missiaggia A.A., Dias D.C., Rezende G.D.P.S, Gonçalves F.M.A, Acosta J.J., Kirst M., RESENDE M.F.R., Munoz P. Genomic selection prediction models comparing sequence capture and SNP-array genotyping methods. Mol Breeding 38:115. 2018

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• Inostroza L., Bhakta M., Acuña H., Vasquez C., Ibañez J., Tapia G., Mei W., Kirst M., RESENDE M.F.R., Munoz P. Understanding the complexity of cold tolerance in white clover using temperature gradient locations and a GWAS approach. The Plant Genome, 2018

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• Ferrao L.F.V., Benevenuto J., de Bem I.O., Cellon C., Olmstead J., Kirst M., RESENDE M.F.R., Munoz PM. Insights into the genetic basis of blueberry fruit-related traits using diploid and polyploid models in a GWAS context. Front. Ecol. Evol., 24 July 2018 

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• Sousa T.V., Caixeta E.T., Alkimim E.R., Oliveira A.C.B., Pereira A.A., Sakiyama N.S., RESENDE M.F.R., Zambolim L. Population structure and genetic diversity of coffee progenies derived from Catuaí and Híbrido de Timor revealed by genome-wide SNP marker. Tree Genetics and Genomics 13:124. 2017

 

• Fahrenkrog A.M., Neves L.G., RESENDE M.F.R, Dervinis C., Davenport R., Barbazuk W.B., Kirst, M.Population genomics of the eastern cottonwood (Populus deltoides). Ecology and Evolution. 7:9426–9440. 2017

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• Muller, B., Neves, L.G., Filho, J.A., RESENDE M.F.R., Munoz, P., Santos, P.E.T., Filho, E.P., Kirst, M., Grattapaglia, D. Genomic prediction of growth traits in breeding populations of Eucalyptus benthamii and E. pellita and a contrast to genome-wide association in explaining heritable variation. BMC genomics 18 (1), 524. 2017

 

• Tieman, D.M., Zhu, G., RESENDE M.F.R., Nguyen, C., Bies, D., Rambla, J.L., Beltran, K.S.O, Taylor, M., Zhang, B., Ikeda, H., Liu, Z., Fisher, J., Monforte, A., Zamir, D., Granell, A., Kirst, M., Huang, S., Klee, H.J. A genetic roadmap to improved tomato flavor. Science 355 (6323), 391-394. 2017

 

• Fahrenkrog, A.M., Neves, L.G., RESENDE M.F.R., Vazquez, A.I., de los Campos, G., Dervinis, C., Sykes, R., Davis, M., Davenport, R., Barbazuk, W., Kirst, M. Genome‐wide association study reveals putative regulators of bioenergy traits in Populus deltoides. DOI: 10.1111/nph.14154. New Phytologist, 2017.

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• Azevedo, C.F., Resende, M.D.V., Silva, F.F., Viana, J.M.S., Valente, M.S.F., RESENDE M.F.R., New estimators for the experimental accuracy of genomic selection. DOI: 10.4238/gmr.15048838, Genetics and Molecular Research, 2016

 

• Filho J.A., Rodrigues, J.F.G., Silva, F.F., Resende, M.D.V., Munoz, P., Kirst, M., RESENDE M.F.R., The contribution of dominance to phenotype prediction in pine breeding and simulated population. DOI: 10.1038/hdy.2016.23, Heredity, 2016.

 

• Amadeu, R., Cellon, C., Olmstead J., Garcia, A., RESENDE M.F.R., Munoz, P. AGHmatrix: R package to construct relationship matrices for autotetraploid and diploid species, a Blueberry Example. DOI: 103835/plantgenome2016.01.0009. The Plant Genome, 2016.

 

• Song, J., Yang, X., RESENDE M.F.R., Neves, L.G., Todd, J., Zhang, J., Comstock, J., Wang, J. Natural allelic variation in the germplasm of highly polyploid sugarcane. DOI: 10.3389/fpls.2016.00804. Frontiers in Plant Science, 2016.

 

• Vazquez, A., Veturi, Y., Behring, M., Shrestha, S., Kirst, M., RESENDE M.F.R., de los Campos, G. Increased Proportion of Variance Explained and Prediction Accuracy of Survival of Breast Cancer Patients with use of Whole-Genome Multi-Omic Profiles. DOI: 10.1534/genetics.115.185181, Genetics, 2016.

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• Raposo F.A., Neves L.G., RESENDE M.F.R., Mobili F., Miyaki C.Y., Pellegrino K.C.M., Biondo C. Ultraconserved elements sequencing as a low-cost source of complete mitochondrial genomes and microsatellite markers in non-model amniotes. PLoS ONE 10: e0138446, 2015.

 

• Azevedo C.F., Resende M.D.V., Silva F.F., Viana J.M.S., Ferreira M.S.V., RESENDE M.F.R., Munoz P. Ridge, Lasso and Bayessian Additive-Dominance Genomic Models. BMC Genetics,16:105, 2015.

 

• Westbrook J.W., Walker A.R., Neves L.G., Munoz P., RESENDE M.F.R., Peter G.F., Davis J. Discovering genes that regulate resin canal number in Pinus stems by integrating association genetics and QTL analysis across environments, ages, and populations. New Phytologist, 205(2): 627-641, 2015.

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• Munoz P.*, RESENDE M.F.R.*; Gezan S. A., Resende M.D.V., de los Campos G., Kirst M., Huber D, Peter G.F. Unraveling Additive from Non-additive Effects using Genomic Relationship Matrices. Genetics, 198: 1759-1768, 2014. *Both authors contributed equally to this paper.

 

• Quesada T., RESENDE M.F.R., Munoz P., Wegrzyn J.L., Neale D.B., Kirst M., Peter G.F., Gezan S.A., Nelson C.D., Davis J.M. Mapping fusiform rust resistance genes within a complex mating design of loblolly pine. Forests, 5:347-362, 2014.

 

• Munoz P.R., RESENDE M.F.R., Huber D.A., Quesada T., Resende M.D.V., Neale D.B., Wegrzyn J.L., Kirst M., Peter G.F. Genomic relationship matrix for correcting pedigree errors in breeding populations: impact on genetic parameters and genomic selection accuracy. Crop Science, 54:1115–1123, 2014.

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• Westbrook J.W., RESENDE M.F.R., Munoz P., Walker A.R., Wegrzyn J.L., Nelson C.D., Neale D.B. et al. Association genetics of oleoresin flow in loblolly pine: discovering genes and predicting phenotype for improved resistance to bark beetles and bioenergy potential. New Phytologist, 199: 89–100, 2013.

 

• RESENDE M.F.R., Munoz P., Resende M.D.V., Garrick D.J., Fernando R.L., Davis J.M., Jokela E.J., Martin T.A., Peter G.F., Kirst M. Accuracy of genomic selection methods in a standard data set of loblolly pine (Pinus taeda L.). Genetics, 190: 1503–1510, 2012.

 

• RESENDE M.F.R., Munoz P., Acosta J.J., Peter G.F., Davis J.M., Grattapaglia D., Resende M.D.V., Kirst M. Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments. New Phytologist, 193: 617–624, 2012.

 

• Resende M.D.V., RESENDE M.F.R., Sansaloni C.P., Petroli C.D., Missiaggia A.A., Aguiar A.M., Abad J.M., Takahashi E.K., Rosado A.M., Faria D.A. et al. Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees. New Phytologist, 194: 116–128, 2012.

 

• Resende M.D.V., Silva F.F., Viana J.M.S., Peternelli L.A., RESENDE M.F.R., Munoz P. Statistical methods in genome-wide selection (Original in Portuguese: “Metodos estatísticos na selecao genomica ampla”). Embrapa Documents 219. Brazil. ISSN 1980-3958, 2011.

 

• Resende M.D.V., RESENDE M.F.R., Aguiar A.M., Abad J.I.M., Missiaggia, A.A., Sansaloni C., Petroli C., Grattapaglia D. Computation of genomic selection algorithms. (Original in Portuguese: “Computação da seleção genômica ampla”). Embrapa Documents 210. Brazil. ISSN 1679-2599, 2010.

 

• Rosado T.B., Tomaz R.S., RESENDE M.F.R.; Rosado A.M., Araujo E.F., Alfenas A.C., Cruz C.D. Detection of QTL associated to rust resistance using IBD-based methodologies in exogamic Eucalyptus populations. Crop Breeding and Applied Biotechnology, 10: 321-328, 2010.

 

• Rosado A.M., Rosado T.B., RESENDE M.F.R., Cruz C.D. Predicted genetic gains by different selection methods in Eucalyptus urophylla progenies. Brazilian Journal of Agricultural Research, v. 44, 12: 1653-1659, 2009.

 

•  Bhering, L.L., Cruz, C.D., Vasconcelos E.S., RESENDE M.F.R., Barros, W.S., Rosado, T.B. Efficiency of the multilocus analysis for the construction of genetic maps. Crop Breeding and Applied Biotechnology, v.9, p 308-312, 2009

 

• Bhering L.L., Cruz C.D., Vasconcelos E.S., Ferreira A., RESENDE M.F.R.  Alternative Methodology for the Scott Knot test. Crop Breeding and Applied Biotechnology, v. 8, p 9-16, 2008.

 

• Ferreira A., Cruz C.D., Vasconcelos E. S., Nascimento M., RESENDE M.F.R., Silva M. Use of the non parametric bootstrap in evaluating the genotypic, phenotypic and environmental correlations. Acta Scientiarum. Agronomy, v. 30, p. 657-663, 2008.

 

• Vasconcelos, E.S., Cruz, C.D., Bhering, L.L., RESENDE M.F.R. Alternative methodology for the cluster analysis. Pesquisa Agropecuária Brasileira. V.42, p1421-1428, 2007

 

• Mafia R.G, Alfenas A.C., RESENDE M.F.R. Damping-off of Forest species caused by Sclerotium rolfsii Sacc. Brazilian Journal of Forest Sciences v.31, n.4, p. 629 - 634, 2007.